Assign cells to feature-specific quantiles. — AssignQuantiles • pochi

Assign cells to feature-specific quantiles.

Usage

AssignQuantiles(
  object,
  feature,
  assay = "ADT",
  layer = "data",
  split.by = "run_10x",
  quantile.probs = c(0, 0.25, 0.5, 0.75, 1)
)

Arguments

object: Seurat object
feature: Which feature to use for quantile calculation
assay: Which assay the feature is located within
layer: Which layer the to pull from within specified assay
split.by: If not NULL, which metadata feature to split by before calculating quantiles. Will then calculate quantiles within each split object
quantile.probs: Which quantiles to split at

Value

Returns a Seurat object with quantile metadata added

Details

Determines the quantile of expression for each cell for a specified feature in the Seurat object