Seurat DimPlot enhancement — DimPlotEdges • pochi

Seurat DimPlot enhancement

Usage

DimPlotEdges(
  object,
  graph.choice = "RNA_nn",
  reduction = "umap",
  line.thickness = 0.05,
  line.color = "grey",
  raster = FALSE,
  ...
)

Arguments

object: Seurat object
graph.choice: Which Graph to utilize for plotting with the DimPlot
reduction: Which reduction to use in the DimPlot
line.thickness: Thickness of lines connecting individual points in the DimPlot based on the graph.choice Graph
line.color: Color of the lines connecting individual points
raster: Raseterization boolean
...: Other arguments to Seurat::DimPlot

Value

Returns a DimPlot

Details

Identical to DimPlot with the exception that edges can be drawn on the DimPlot between cells connected in the specified Graph.