Seurat FeaturePlot enhancement — FeaturePlotPlus • pochi

Seurat FeaturePlot enhancement

Usage

FeaturePlotPlus(
  object,
  feature,
  min.value = 0,
  assay = "RNA",
  viridis_choice = "D",
  ...
)

Arguments

object: Seurat object
feature: Which feature to plot (singular)
min.value: Which threshold value to set as not-expressed/grey in the FeaturePlot
assay: Which assay the feature is located in
viridis_choice: Which viridis palette to choose
...: Other arguments to Seurat::FeaturePlot

Value

Returns a FeaturePlot

Details

Identical to FeaturePlot with the exception that 0-values are set to grey, which replicates the Monocle-type UMAP plots.